IL_8BR8_187

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAAACG*CCCGC

Length

12 nucleotides

Bulged bases

8BR8|1|St|G|568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_187 not in the Motif Atlas

Homologous match to IL_8C3A_433

Geometric discrepancy: 0.5629

The information below is about IL_8C3A_433

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83023.1

Basepair signature

cWW-R-L-R-L-R-L-L-L-L

Number of instances in this motif group

1

Unit IDs

8BR8|1|St|G|532
8BR8|1|St|G|533
8BR8|1|St|A|534
8BR8|1|St|A|535
8BR8|1|St|A|536
8BR8|1|St|C|537
8BR8|1|St|G|538
*
8BR8|1|St|C|565
8BR8|1|St|C|566
8BR8|1|St|C|567
8BR8|1|St|G|568
8BR8|1|St|C|569

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain SM

Ribosomal protein S11