IL_8BR8_193

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAGCG*CGC

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|C|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_193 not in the Motif Atlas

Homologous match to IL_8CRE_477

Geometric discrepancy: 0.4866

The information below is about IL_8CRE_477

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8BR8|1|Lt|G|728
8BR8|1|Lt|A|729
8BR8|1|Lt|G|730
8BR8|1|Lt|C|731
8BR8|1|Lt|G|732
*
8BR8|1|Lt|C|747
8BR8|1|Lt|G|748
8BR8|1|Lt|C|749

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LK

Ribosomal protein L10