IL_8BRM_011
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCCAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_011 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2562
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8BRM|1|LE|G|72
8BRM|1|LE|C|73
8BRM|1|LE|C|74
8BRM|1|LE|A|75
8BRM|1|LE|G|76
8BRM|1|LE|U|77
8BRM|1|LE|A|78
8BRM|1|LE|C|79
*
8BRM|1|LE|G|99
8BRM|1|LE|G|100
8BRM|1|LE|A|101
8BRM|1|LE|A|102
8BRM|1|LE|C|103
8BRM|1|LE|A|104
8BRM|1|LE|C|105
Current chains
- Chain LE
- 5S rRNA
Nearby chains
- Chain LF
- Ribosomal protein L5
- Chain LH
- Ribosomal protein L7
- Chain LK
- Ribosomal protein L10
- Chain LT
- Ribosomal protein L18a
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
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