IL_8BRM_023

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_023 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0936

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8BRM|1|Lt|C|551
8BRM|1|Lt|G|552
8BRM|1|Lt|A|553
8BRM|1|Lt|G|554
8BRM|1|Lt|G|555
*
8BRM|1|Lt|U|572
8BRM|1|Lt|G|573
8BRM|1|Lt|G|574
8BRM|1|Lt|A|575
8BRM|1|Lt|G|576

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LS

Ribosomal protein L19

Chain Lq

Ribosomal protein L37a