IL_8BRM_033

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGCCG*CCCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_033 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.1839

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8BRM|1|Lt|G|719
8BRM|1|Lt|G|720
8BRM|1|Lt|C|721
8BRM|1|Lt|C|722
8BRM|1|Lt|G|723
*
8BRM|1|Lt|C|754
8BRM|1|Lt|C|755
8BRM|1|Lt|C|756
8BRM|1|Lt|C|757
8BRM|1|Lt|C|758

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LK

Ribosomal protein L10