IL_8BRM_047

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGCC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_047 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.1835

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8BRM|1|Lt|G|1185
8BRM|1|Lt|C|1186
8BRM|1|Lt|G|1187
8BRM|1|Lt|C|1188
8BRM|1|Lt|C|1189
*
8BRM|1|Lt|G|1197
8BRM|1|Lt|G|1198
8BRM|1|Lt|C|1199

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LQ

Ribosomal protein L17

Chain LS

Ribosomal protein L19