IL_8BRM_048
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUAAG*CGAACG
- Length
- 11 nucleotides
- Bulged bases
- 8BRM|1|Lt|A|1261, 8BRM|1|Lt|C|1262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_048 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1416
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8BRM|1|Lt|C|1216
8BRM|1|Lt|U|1217
8BRM|1|Lt|A|1218
8BRM|1|Lt|A|1219
8BRM|1|Lt|G|1220
*
8BRM|1|Lt|C|1258
8BRM|1|Lt|G|1259
8BRM|1|Lt|A|1260
8BRM|1|Lt|A|1261
8BRM|1|Lt|C|1262
8BRM|1|Lt|G|1263
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain LD
- 5.8S rRNA
- Chain LG
- Ribosomal protein L39
- Chain Lh
- Ribosomal protein L34
- Chain Lk
- Ribosomal protein L37
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