IL_8BRM_058

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8BRM|1|Lt|G|1823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_058 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.1049

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BRM|1|Lt|A|1533
8BRM|1|Lt|G|1534
8BRM|1|Lt|U|1535
8BRM|1|Lt|C|1536
8BRM|1|Lt|G|1537
8BRM|1|Lt|G|1538
*
8BRM|1|Lt|C|1821
8BRM|1|Lt|U|1822
8BRM|1|Lt|G|1823
8BRM|1|Lt|U|1824

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LW

Ribosomal protein L23