IL_8BRM_059
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8BRM|1|Lt|A|1563
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_059 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1152
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BRM|1|Lt|C|1550
8BRM|1|Lt|G|1551
8BRM|1|Lt|U|1552
8BRM|1|Lt|A|1553
8BRM|1|Lt|A|1554
8BRM|1|Lt|C|1555
*
8BRM|1|Lt|G|1560
8BRM|1|Lt|G|1561
8BRM|1|Lt|A|1562
8BRM|1|Lt|A|1563
8BRM|1|Lt|A|1564
8BRM|1|Lt|A|1565
8BRM|1|Lt|G|1566
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LS
- Ribosomal protein L19
- Chain Lo
- Ribosomal protein L41
- Chain Lq
- Ribosomal protein L37a
- Chain St
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: