IL_8BRM_063

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAGGG*CGCUGGCG

Length

14 nucleotides

Bulged bases

8BRM|1|Lt|G|1648, 8BRM|1|Lt|C|1663, 8BRM|1|Lt|C|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_063 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1482

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8BRM|1|Lt|C|1645
8BRM|1|Lt|G|1646
8BRM|1|Lt|A|1647
8BRM|1|Lt|G|1648
8BRM|1|Lt|G|1649
8BRM|1|Lt|G|1650
*
8BRM|1|Lt|C|1661
8BRM|1|Lt|G|1662
8BRM|1|Lt|C|1663
8BRM|1|Lt|U|1664
8BRM|1|Lt|G|1665
8BRM|1|Lt|G|1666
8BRM|1|Lt|C|1667
8BRM|1|Lt|G|1668

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain Lq

Ribosomal protein L37a

Chain St

Small subunit ribosomal RNA; SSU rRNA