IL_8BRM_071

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCAAAUGCCUCG*CGUG

Length

16 nucleotides

Bulged bases

8BRM|1|Lt|A|1769, 8BRM|1|Lt|C|1775, 8BRM|1|Lt|U|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_071 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.1803

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BRM|1|Lt|C|1765
8BRM|1|Lt|C|1766
8BRM|1|Lt|A|1767
8BRM|1|Lt|A|1768
8BRM|1|Lt|A|1769
8BRM|1|Lt|U|1770
8BRM|1|Lt|G|1771
8BRM|1|Lt|C|1772
8BRM|1|Lt|C|1773
8BRM|1|Lt|U|1774
8BRM|1|Lt|C|1775
8BRM|1|Lt|G|1776
*
8BRM|1|Lt|C|1792
8BRM|1|Lt|G|1793
8BRM|1|Lt|U|1794
8BRM|1|Lt|G|1795

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lo

Ribosomal protein L41

Chain St

Small subunit ribosomal RNA; SSU rRNA