IL_8BRM_093

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCAGUAC*GGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_093 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.1206

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8BRM|1|Lt|C|2437
8BRM|1|Lt|C|2438
8BRM|1|Lt|A|2439
8BRM|1|Lt|G|2440
8BRM|1|Lt|U|2441
8BRM|1|Lt|A|2442
8BRM|1|Lt|C|2443
*
8BRM|1|Lt|G|2448
8BRM|1|Lt|G|2449
8BRM|1|Lt|A|2450
8BRM|1|Lt|A|2451
8BRM|1|Lt|C|2452
8BRM|1|Lt|G|2453

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain Ls

Ubiquitin/Ribosomal protein L40e