IL_8BRM_096

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCCCG*CGCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_096 not in the Motif Atlas

Geometric match to IL_7RQB_105

Geometric discrepancy: 0.2388

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8BRM|1|Lt|C|2472
8BRM|1|Lt|C|2473
8BRM|1|Lt|C|2474
8BRM|1|Lt|C|2475
8BRM|1|Lt|G|2476
*
8BRM|1|Lt|C|2501
8BRM|1|Lt|G|2502
8BRM|1|Lt|C|2503
8BRM|1|Lt|C|2504
8BRM|1|Lt|G|2505

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LX

Ribosomal protein L24

Chain Le

Ribosomal protein L31B