IL_8BRM_101

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGUACG*CUGAG

Length

11 nucleotides

Bulged bases

8BRM|1|Lt|G|2668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_101 not in the Motif Atlas

Geometric match to IL_5TBW_133

Geometric discrepancy: 0.1329

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8BRM|1|Lt|U|2640
8BRM|1|Lt|G|2641
8BRM|1|Lt|U|2642
8BRM|1|Lt|A|2643
8BRM|1|Lt|C|2644
8BRM|1|Lt|G|2645
*
8BRM|1|Lt|C|2666
8BRM|1|Lt|U|2667
8BRM|1|Lt|G|2668
8BRM|1|Lt|A|2669
8BRM|1|Lt|G|2670

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LX

Ribosomal protein L24