IL_8BRM_104

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAG*CGACG

Length

9 nucleotides

Bulged bases

8BRM|1|St|A|381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_104 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.35

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

8BRM|1|St|C|37
8BRM|1|St|A|38
8BRM|1|St|A|39
8BRM|1|St|G|40
*
8BRM|1|St|C|379
8BRM|1|St|G|380
8BRM|1|St|A|381
8BRM|1|St|C|382
8BRM|1|St|G|383

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SK

Ribosomal protein S9