IL_8BRM_111

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGACACC*GCCAAGAC

Length

15 nucleotides

Bulged bases

8BRM|1|St|G|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_111 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.246

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8BRM|1|St|G|127
8BRM|1|St|G|128
8BRM|1|St|A|129
8BRM|1|St|C|130
8BRM|1|St|A|131
8BRM|1|St|C|132
8BRM|1|St|C|133
*
8BRM|1|St|G|148
8BRM|1|St|C|149
8BRM|1|St|C|150
8BRM|1|St|A|151
8BRM|1|St|A|152
8BRM|1|St|G|153
8BRM|1|St|A|154
8BRM|1|St|C|155

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SG

Ribosomal protein S6

Chain Sb

Ribosomal protein S24