IL_8BRM_117

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAG*CGACUC

Length

9 nucleotides

Bulged bases

8BRM|1|St|U|293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_117 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1678

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BRM|1|St|G|276
8BRM|1|St|A|277
8BRM|1|St|G|278
*
8BRM|1|St|C|289
8BRM|1|St|G|290
8BRM|1|St|A|291
8BRM|1|St|C|292
8BRM|1|St|U|293
8BRM|1|St|C|294

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain SO

Ribosomal protein S23