IL_8BRM_118

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_118 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2473

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8BRM|1|St|C|324
8BRM|1|St|A|325
8BRM|1|St|U|326
*
8BRM|1|St|A|333
8BRM|1|St|C|334
8BRM|1|St|G|335

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LW

Ribosomal protein L23

Chain SG

Ribosomal protein S6