IL_8BRM_131

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GG*CGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_131 not in the Motif Atlas

Geometric match to IL_1U9S_008

Geometric discrepancy: 0.2507

The information below is about IL_1U9S_008

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

8BRM|1|St|G|588
8BRM|1|St|G|589
*
8BRM|1|St|C|604
8BRM|1|St|G|605
8BRM|1|St|C|606

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain SH

Ribosomal protein S7