IL_8BRM_140
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- AGAAG*CGUAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_140 not in the Motif Atlas
- Geometric match to IL_6CZR_135
- Geometric discrepancy: 0.1894
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8BRM|1|St|A|744
8BRM|1|St|G|745
8BRM|1|St|A|746
8BRM|1|St|A|747
8BRM|1|St|G|748
*
8BRM|1|St|C|764
8BRM|1|St|G|765
8BRM|1|St|U|766
8BRM|1|St|A|767
8BRM|1|St|U|768
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain Lo
- Ribosomal protein L41
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
- Chain SQ
- Ribosomal protein S14
- Chain Sd
- Ribosomal protein S26
Coloring options: