IL_8BRM_142
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGC*GCUCCGG
- Length
- 10 nucleotides
- Bulged bases
- 8BRM|1|St|C|840, 8BRM|1|St|C|842, 8BRM|1|St|G|844
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_142 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.203
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BRM|1|St|C|788
8BRM|1|St|G|789
8BRM|1|St|C|790
*
8BRM|1|St|G|839
8BRM|1|St|C|840
8BRM|1|St|U|841
8BRM|1|St|C|842
8BRM|1|St|C|843
8BRM|1|St|G|844
8BRM|1|St|G|845
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SB
- Ribosomal protein S2
- Chain SJ
- Ribosomal protein S15A
- Chain SM
- Ribosomal protein S11
- Chain SO
- Ribosomal protein S23
- Chain SP
- Ribosomal protein S13
- Chain Se
- Ribosomal protein S27
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