IL_8BRM_145
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_145 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1184
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8BRM|1|St|G|855
8BRM|1|St|G|856
8BRM|1|St|A|857
8BRM|1|St|G|858
8BRM|1|St|U|859
8BRM|1|St|A|860
8BRM|1|St|U|861
8BRM|1|St|G|862
*
8BRM|1|St|U|873
8BRM|1|St|G|874
8BRM|1|St|A|875
8BRM|1|St|A|876
8BRM|1|St|A|877
8BRM|1|St|C|878
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain Lo
- Ribosomal protein L41
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
- Chain SO
- Ribosomal protein S23
Coloring options: