IL_8BRM_150

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGG*CACG

Length

7 nucleotides

Bulged bases

8BRM|1|St|A|1166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_150 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3398

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8BRM|1|St|C|921
8BRM|1|St|G|922
8BRM|1|St|G|923
*
8BRM|1|St|C|1165
8BRM|1|St|A|1166
8BRM|1|St|C|1167
8BRM|1|St|G|1168

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain SV

Ribosomal protein S18