IL_8BRM_159

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_159 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.2129

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8BRM|1|St|C|1031
8BRM|1|St|C|1032
8BRM|1|St|C|1033
*
8BRM|1|St|G|1066
8BRM|1|St|A|1067
8BRM|1|St|G|1068

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SA

Ribosomal protein SA

Chain SB

Ribosomal protein S2

Chain SC

Ribosomal protein S3

Chain SU

Ribosomal protein S17