IL_8BRM_168

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8BRM|1|St|C|1325, 8BRM|1|St|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_168 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1648

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|C|1324
8BRM|1|St|C|1325
8BRM|1|St|G|1326
*
8BRM|1|St|C|1419
8BRM|1|St|A|1420
8BRM|1|St|A|1421
8BRM|1|St|G|1422

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Sd

Ribosomal protein S26