IL_8BRM_169

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_169 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1209

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|G|1326
8BRM|1|St|C|1327
8BRM|1|St|C|1328
8BRM|1|St|C|1329
*
8BRM|1|St|G|1415
8BRM|1|St|U|1416
8BRM|1|St|A|1417
8BRM|1|St|A|1418
8BRM|1|St|C|1419

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lo

Ribosomal protein L41

Chain Lt

Large subunit ribosomal RNA; LSU rRNA