IL_8BRM_173

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_173 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1261

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BRM|1|St|C|1341
8BRM|1|St|G|1342
8BRM|1|St|A|1343
8BRM|1|St|C|1344
*
8BRM|1|St|G|1399
8BRM|1|St|G|1400
8BRM|1|St|A|1401
8BRM|1|St|G|1402

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LW

Ribosomal protein L23

Chain Lo

Ribosomal protein L41

Chain Lt

Large subunit ribosomal RNA; LSU rRNA