IL_8BRM_183

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_183 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.2143

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8BRM|1|Lt|G|2246
8BRM|1|Lt|G|2247
8BRM|1|Lt|C|2248
8BRM|1|Lt|U|2249
*
8BRM|1|Lt|G|2286
8BRM|1|Lt|A|2287
8BRM|1|Lt|U|2288
8BRM|1|Lt|C|2289
8BRM|1|Lt|C|2290

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains