IL_8BTK_022

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_022 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1348

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BTK|1|A2|G|412
8BTK|1|A2|G|413
8BTK|1|A2|G|414
*
8BTK|1|A2|C|425
8BTK|1|A2|G|426
8BTK|1|A2|A|427
8BTK|1|A2|U|428
8BTK|1|A2|OMU|429
8BTK|1|A2|C|430

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23