IL_8BTK_025

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8BTK|1|A2|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_025 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.418

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BTK|1|A2|A|530
8BTK|1|A2|U|531
*
8BTK|1|A2|A|555
8BTK|1|A2|A|556
8BTK|1|A2|U|557

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

Ribosomal protein S9 (Predicted)