IL_8BTK_026

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_026 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2165

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8BTK|1|A2|G|536
8BTK|1|A2|A|537
8BTK|1|A2|C|538
*
8BTK|1|A2|G|547
8BTK|1|A2|G|548
8BTK|1|A2|C|549
8BTK|1|A2|C|550

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30