IL_8BTK_029

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

8BTK|1|A2|G|601

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_029 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1046

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8BTK|1|A2|A|600
8BTK|1|A2|G|601
8BTK|1|A2|OMG|602
8BTK|1|A2|G|603
8BTK|1|A2|C|604
8BTK|1|A2|A|605
8BTK|1|A2|A|606
8BTK|1|A2|G|607
*
8BTK|1|A2|C|637
8BTK|1|A2|U|638

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2

Chain Ai

Ribosomal protein S9 (Predicted)