IL_8BTK_039
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUCUCGG*CCGAAG
- Length
- 14 nucleotides
- Bulged bases
- 8BTK|1|A2|U|748
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_039 not in the Motif Atlas
- Geometric match to IL_6CZR_369
- Geometric discrepancy: 0.3599
- The information below is about IL_6CZR_369
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BTK|1|A2|C|746
8BTK|1|A2|C|747
8BTK|1|A2|U|748
8BTK|1|A2|C|749
8BTK|1|A2|U|750
8BTK|1|A2|C|751
8BTK|1|A2|G|752
8BTK|1|A2|G|753
*
8BTK|1|A2|C|792
8BTK|1|A2|C|793
8BTK|1|A2|G|794
8BTK|1|A2|A|795
8BTK|1|A2|A|796
8BTK|1|A2|G|797
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- 40S ribosomal protein S4
- Chain Af
- 40S ribosomal protein S6
- Chain Ag
- 40S ribosomal protein S7
- Chain Ak
- 40S ribosomal protein S11
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