IL_8BTK_040

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_040 not in the Motif Atlas

Geometric match to IL_8P9A_322

Geometric discrepancy: 0.3551

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8BTK|1|A2|G|753
8BTK|1|A2|C|754
8BTK|1|A2|G|755
*
8BTK|1|A2|C|791
8BTK|1|A2|C|792

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6