3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GA*UACC
Length
6 nucleotides
Bulged bases
8P9A|1|AR|A|2808
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.2
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
44

Unit IDs

8P9A|1|AR|G|2412
8P9A|1|AR|A|2413
*
8P9A|1|AR|U|2807
8P9A|1|AR|A|2808
8P9A|1|AR|C|2809
8P9A|1|AR|C|2810

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CD
60S ribosomal protein L2-A

Coloring options:

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