IL_8BTK_053

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8BTK|1|A2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_053 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1044

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8BTK|1|A2|G|953
8BTK|1|A2|C|954
8BTK|1|A2|U|955
8BTK|1|A2|A|956
8BTK|1|A2|G|957
*
8BTK|1|A2|C|968
8BTK|1|A2|U|969
8BTK|1|A2|U|970
8BTK|1|A2|G|971
8BTK|1|A2|G|972
8BTK|1|A2|A|973
8BTK|1|A2|C|974
8BTK|1|A2|C|975

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain An

40S ribosomal protein S14

Chain B5

Large subunit ribosomal RNA; LSU rRNA