IL_8BTK_058

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_058 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1576

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BTK|1|A2|U|1102
8BTK|1|A2|G|1103
8BTK|1|A2|C|1104
*
8BTK|1|A2|G|1130
8BTK|1|A2|G|1131
8BTK|1|A2|G|1132

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain AE

eS26

Chain Aa

40S ribosomal protein S3a

Chain Am

uS15

Chain Aq

40S ribosomal protein eS17