IL_8BTK_062

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

8BTK|1|A2|A|1696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_062 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2737

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8BTK|1|A2|U|1203
8BTK|1|A2|G|1204
8BTK|1|A2|A|1205
*
8BTK|1|A2|U|1695
8BTK|1|A2|A|1696
8BTK|1|A2|C|1697
8BTK|1|A2|A|1698

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

eS26

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2