IL_8BTK_075
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 8BTK|1|A2|A|1490
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_075 not in the Motif Atlas
- Geometric match to IL_6IA2_004
- Geometric discrepancy: 0.1407
- The information below is about IL_6IA2_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8BTK|1|A2|C|1337
8BTK|1|A2|4AC|1338
8BTK|1|A2|G|1339
*
8BTK|1|A2|C|1489
8BTK|1|A2|A|1490
8BTK|1|A2|OMG|1491
8BTK|1|A2|G|1492
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain Ab
- Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2
- Chain Ac
- 40S ribosomal protein S3
- Chain Ap
- uS9
- Chain At
- 40S ribosomal protein uS10
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