IL_8BTK_083
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_083 not in the Motif Atlas
- Geometric match to IL_4P3T_001
- Geometric discrepancy: 0.1422
- The information below is about IL_4P3T_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8BTK|1|A2|A|1538
8BTK|1|A2|C|1539
8BTK|1|A2|U|1540
*
8BTK|1|A2|A|1595
8BTK|1|A2|U|1596
8BTK|1|A2|U|1597
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ae
- Ribosomal protein S5
- Chain Ap
- uS9
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- 40S ribosomal protein S19
- Chain Ay
- 40S ribosomal protein S25
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