IL_8BTK_087

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8BTK|1|A2|C|1702, 8BTK|1|A2|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_087 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.116

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8BTK|1|A2|C|1701
8BTK|1|A2|C|1702
8BTK|1|A2|G|1703
*
8BTK|1|A2|C|1834
8BTK|1|A2|A|1835
8BTK|1|A2|A|1836
8BTK|1|A2|G|1837

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

eS26

Chain AH

mRNA

Chain AT

Transfer RNA; tRNA