IL_8BTK_088

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_088 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1065

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8BTK|1|A2|G|1703
8BTK|1|A2|OMC|1704
8BTK|1|A2|C|1705
8BTK|1|A2|C|1706
*
8BTK|1|A2|G|1830
8BTK|1|A2|U|1831
8BTK|1|A2|A|1832
8BTK|1|A2|6MZ|1833
8BTK|1|A2|C|1834

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AH

mRNA

Chain AT

Transfer RNA; tRNA

Chain Az

60S ribosomal protein L41

Chain B5

Large subunit ribosomal RNA; LSU rRNA