IL_8BTK_090
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8BTK|1|A2|A|1826
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_090 not in the Motif Atlas
- Geometric match to IL_1DUQ_001
- Geometric discrepancy: 0.328
- The information below is about IL_1DUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25872.4
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BTK|1|A2|C|1709
8BTK|1|A2|G|1710
8BTK|1|A2|C|1711
8BTK|1|A2|U|1712
*
8BTK|1|A2|A|1823
8BTK|1|A2|A|1824
8BTK|1|A2|A|1825
8BTK|1|A2|A|1826
8BTK|1|A2|G|1827
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S30
- Chain AH
- mRNA
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60S ribosomal protein L41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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