IL_8BTK_097

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_097 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2035

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8BTK|1|A2|C|1743
8BTK|1|A2|G|1744
8BTK|1|A2|G|1745
8BTK|1|A2|A|1746
8BTK|1|A2|U|1747
*
8BTK|1|A2|A|1789
8BTK|1|A2|G|1790
8BTK|1|A2|A|1791
8BTK|1|A2|A|1792
8BTK|1|A2|G|1793

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain BW

Ribosomal protein L24