IL_8BTK_100

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_100 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.2127

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8BTK|1|A2|G|1755
8BTK|1|A2|C|1756
8BTK|1|A2|C|1757
*
8BTK|1|A2|G|1777
8BTK|1|A2|G|1778
8BTK|1|A2|C|1779

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BW

Ribosomal protein L24