IL_8BTK_122

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8BTK|1|B5|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_122 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.2438

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

8BTK|1|B5|G|443
8BTK|1|B5|G|444
8BTK|1|B5|U|445
8BTK|1|B5|C|446
*
8BTK|1|B5|G|1244
8BTK|1|B5|C|1245
8BTK|1|B5|U|1246
8BTK|1|B5|A|1247
8BTK|1|B5|C|1248

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Be

eL32

Chain Bf

60S ribosomal protein L35a