IL_8BTK_131

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGG*CCC

Length

7 nucleotides

Bulged bases

8BTK|1|B5|C|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_131 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.19

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BTK|1|B5|G|498
8BTK|1|B5|C|499
8BTK|1|B5|G|500
8BTK|1|B5|G|501
*
8BTK|1|B5|C|649
8BTK|1|B5|C|650
8BTK|1|B5|C|651

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4