IL_8BTK_142

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8BTK|1|B5|G|743, 8BTK|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_142 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2344

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BTK|1|B5|G|740
8BTK|1|B5|A|741
8BTK|1|B5|A|742
8BTK|1|B5|G|743
8BTK|1|B5|G|744
8BTK|1|B5|U|745
8BTK|1|B5|G|746
8BTK|1|B5|G|747
*
8BTK|1|B5|U|808
8BTK|1|B5|G|809
8BTK|1|B5|U|810
8BTK|1|B5|U|811
8BTK|1|B5|A|812
8BTK|1|B5|C|813
8BTK|1|B5|A|814
8BTK|1|B5|G|815
8BTK|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

Ribosomal protein L14

Chain BS

60S ribosomal protein L18a