IL_8BTK_146

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_146 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.3997

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8BTK|1|B5|C|992
8BTK|1|B5|G|993
8BTK|1|B5|C|994
*
8BTK|1|B5|G|1111
8BTK|1|B5|G|1112
8BTK|1|B5|A|1113
8BTK|1|B5|G|1120

Current chains

Chain B5

28S rRNA

Nearby chains