IL_8BTK_157

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_157 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2992

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BTK|1|B5|G|1380
8BTK|1|B5|G|1381
8BTK|1|B5|A|1382
8BTK|1|B5|U|1383
8BTK|1|B5|C|1384
*
8BTK|1|B5|G|1410
8BTK|1|B5|C|1411
8BTK|1|B5|G|1412
8BTK|1|B5|C|1413
8BTK|1|B5|A|1414
8BTK|1|B5|C|1415

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

eL18

Chain Bb

60S ribosomal protein L29